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Crystal structure of an ABC transporter solute binding protein (IPR025997) from agrobacterium vitis (AVI_5133, target efi-511220) with bound D-fucose
Analyse Crystal structure of an ABC transporter solute binding protein (IPR025997) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WUT
- Type
- protein
- Length
- 290 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC transporter substrate binding protein (ribose)
- UniProt
- B9K0B2
- Ligands
- FCB, CA, CL
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC transporter substrate binding protein (ribose) | protein | 290 | 45% helix, 19% strand | B9K0B2 |
Ligands and binding sites
- FCB · beta-D-fucopyranose · sugar · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.34 | 0.77 | 19 | empty |
| 2 | 84 | 0.33 | 0.74 | 23 | CL |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 4WUT · CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9K0B2
- Elsewhere: RCSB PDB 4WUT · PDBe 4WUT · UniProt B9K0B2
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