GL1X · GenesisL1 explorer

Research workbench

Crystal structure of aminoglycoside nucleotidylyltransferase ANT(2")- ia, kanamycin-bound

Analyse Crystal structure of aminoglycoside nucleotidylyltransferase ANT(2")- ia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4WQL
Type
protein
Length
175 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
2''-aminoglycoside nucleotidyltransferase
EC
2.7.7.46
UniProt
P0AE05
Ligands
KAN, MG
Pockets
2 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 22% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A2''-aminoglycoside nucleotidyltransferase (EC 2.7.7.46)protein17547% helix, 22% strandP0AE05

Ligands and binding sites

  • KAN · Kanamycin A · ligand · chains A
  • MG · Magnesium ion · metal · 2 copies · chains A
  • IPA · Isopropyl alcohol · additive · 6 copies · chains A
  • GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13800.660.8033MG, KAN, IPA, GOL
2500.250.7313IPA

Compared structures

  • 4WQL · Crystal structure of aminoglycoside nucleotidylyltransferase ANT(2)-Ia · the same entry in another collection · chain A against A, TM-score 1.00
  • P0AE05 · AlphaFold monomer V2.0 prediction for 2''-aminoglycoside nucleotidyltransferase (P0AE05) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.