Research workbench
Phosphatidylinositol 4-kinase III beta crystallized with ATP
Analyse Phosphatidylinositol 4-kinase III beta crystallized with ATP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WAE
- Type
- protein
- Length
- 463 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylinositol 4-kinase BETA,PHOSPHATIDYLINOSITOL 4- kinase beta
- EC
- 2.7.1.67
- UniProt
- Q9UBF8
- Ligands
- ATP
- Pockets
- 5 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylinositol 4-kinase BETA,PHOSPHATIDYLINOSITOL 4- kinase beta (EC 2.7.1.67) | protein | 463 | 49% helix, 8% strand | Q9UBF8 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.69 | 0.80 | 44 | empty |
| 2 | 430 | 0.62 | 0.76 | 51 | ATP |
| 3 | 156 | 0.47 | 0.76 | 20 | empty |
| 4 | 87 | 0.36 | 0.75 | 17 | empty |
| 5 | 77 | 0.30 | 0.73 | 16 | empty |
Compared structures
- 4WAE · Phosphatidylinositol 4-kinase III beta crystallized with ATP · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBF8 · AlphaFold monomer V2.0 prediction for phosphatidylinositol 4-kinase beta (Q9UBF8) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBF8
- Elsewhere: RCSB PDB 4WAE · PDBe 4WAE · UniProt Q9UBF8
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