Research workbench
Crystal structure of the helical domain deleted form msra from clostridium oremlandii
Analyse Crystal structure of the helical domain deleted form msra from clostridium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4W8C
- Type
- protein
- Length
- 271 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide methionine sulfoxide reductase msra
- EC
- 1.8.4.11
- UniProt
- A8MI53
- Ligands
- GLY
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide methionine sulfoxide reductase msra (EC 1.8.4.11) | protein | 134 | 24% helix, 22% strand | A8MI53 |
| B | Peptide methionine sulfoxide reductase msra (EC 1.8.4.11) | protein | 137 | 30% helix, 22% strand | A8MI53 |
Ligands and binding sites
- GLY · Glycine · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 466 | 0.74 | 0.83 | 42 | empty |
| 2 | 732 | 0.73 | 0.79 | 49 | empty |
| 3 | 226 | 0.56 | 0.79 | 35 | empty |
| 4 | 91 | 0.47 | 0.81 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 521 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4W8C · Crystal structure of the helical domain deleted form MsrA from Clostridium oremlandii · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8MI53
- Elsewhere: RCSB PDB 4W8C · PDBe 4W8C · UniProt A8MI53
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.