Research workbench
Crystal structure of 3-oxoacyl-(acyl-carrier protein) synthase II from thermus thermophilus HB8
Analyse Crystal structure of 3-oxoacyl-(acyl-carrier protein) synthase II from thermus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1J3N
- Type
- protein
- Length
- 816 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-(acyl-carrier protein) synthase II
- EC
- 2.3.1.41
- UniProt
- Q7SIC5
- Ligands
- MG
- Pockets
- 7 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 3-oxoacyl-(acyl-carrier protein) synthase II (EC 2.3.1.41) | protein | 408 | 41% helix, 21% strand | Q7SIC5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.75 | 0.99 | 25 | empty |
| 2 | 162 | 0.69 | 0.88 | 36 | empty |
| 3 | 213 | 0.67 | 0.84 | 38 | empty |
| 4 | 53 | 0.33 | 0.78 | 12 | empty |
| 5 | 71 | 0.33 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2970 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 1J3N · Crystal Structure of 3-oxoacyl-(acyl-carrier protein) Synthase II from Thermus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SIC5
- Elsewhere: RCSB PDB 1J3N · PDBe 1J3N · UniProt Q7SIC5
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