Research workbench
Assembly principles of the unique cage formed by the ATPase rava hexamer and the lysine decarboxylase ldci decamer
Analyse Assembly principles of the unique cage formed by the ATPase rava hexamer and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4UPF
- Type
- protein
- Length
- 784 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysine decarboxylase, inducible; ATPase rava
- EC
- 4.1.1.18, 3.6.3.1
- UniProt
- P0A9H3, P31473
- Pockets
- 1 · best druggability 0.41
Structure
electron microscopy · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine decarboxylase, inducible (EC 4.1.1.18) | protein | 710 | 0% helix, 0% strand | P0A9H3 |
| D | ATPase rava (EC 3.6.3.1) | protein | 74 | 0% helix, 0% strand | P31473 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.41 | 0.73 | 37 | empty |
Compared structures
- 4UPF · Assembly principles of the unique cage formed by the ATPase RavA hexamer and the lysine… · the same entry in another collection · chain A against A, TM-score 1.00
- P0A9H3 · AlphaFold monomer V2.0 prediction for inducible lysine decarboxylase (P0A9H3) · a predicted model of the same protein · chain A against A, TM-score 0.98
- P31473 · AlphaFold monomer V2.0 prediction for ATPase rava (P31473) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A9H3
- Every structure of UniProt P31473
- Elsewhere: RCSB PDB 4UPF · PDBe 4UPF · UniProt P0A9H3 · UniProt P31473
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