Research workbench

Deerpox virus DPV022 in complex with bim BH3

Analyse Deerpox virus DPV022 in complex with bim BH3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UF3
Type: protein
Length: 154 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Antiapoptotic membrane protein; BCL-2-like protein 11
UniProt: Q08FF8, O43521
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 81% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Antiapoptotic membrane protein	protein	136	79% helix, 0% strand	Q08FF8
B	BCL-2-like protein 11	protein	18	89% helix, 0% strand	O43521

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	339	0.53	0.73	34	empty

Interfaces

1 interface between chains.

A–B · 987 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

4UF3 · Deerpox virus DPV022 in complex with Bim BH3 · the same entry in another collection · chain A against A, TM-score 1.00
O43521 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 11 (O43521) · a predicted model of the same protein · chain B against A, TM-score 0.68

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q08FF8
Every structure of UniProt O43521
Elsewhere: RCSB PDB 4UF3 · PDBe 4UF3 · UniProt Q08FF8 · UniProt O43521

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