Research workbench
Crystal structure of rhino chromodomain in complex with H3K9ME3
Analyse Crystal structure of rhino chromodomain in complex with H3K9ME3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4U68
- Type
- protein
- Length
- 203 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rhino; Peptide from histone H3.1
- UniProt
- Q7JXA8, P68431
Structure
x-ray diffraction · 4 distinct chains · 41% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhino | protein | 64 | 47% helix, 38% strand | Q7JXA8 |
| B | Rhino | protein | 60 | 40% helix, 40% strand | Q7JXA8 |
| C | Rhino | protein | 58 | 40% helix, 41% strand | Q7JXA8 |
| D, E, F | Peptide from histone H3.1 | protein | 7 | 0% helix, 29% strand | P68431 |
Interfaces
5 interfaces between chains.
- B–C · 763 Ų buried · 11 hydrogen bonds · protein-protein
- B–E · 615 Ų buried · 17 hydrogen bonds · protein-protein
- A–D · 609 Ų buried · 17 hydrogen bonds · protein-protein
- C–F · 593 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 132 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (methylation).
Compared structures
- 4U68 · Crystal structure of Rhino chromodomain in complex with H3K9me3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7JXA8
- Every structure of UniProt P68431
- Elsewhere: RCSB PDB 4U68 · PDBe 4U68 · UniProt Q7JXA8 · UniProt P68431
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