Research workbench
Structure of plant small GTPase OSRAC1 complexed with the non- hydrolyzable GTP analog gmppnp
Analyse Structure of plant small GTPase OSRAC1 complexed with the non- hydrolyzable GTP… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4U5X
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rac-like GTP-binding protein 1
- UniProt
- Q9SSX0
- Ligands
- GNP, MG
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rac-like GTP-binding protein 1 | protein | 178 | 40% helix, 25% strand | Q9SSX0 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.43 | 0.77 | 26 | GNP, MG |
Compared structures
- 4U5X · Structure of plant small GTPase OsRac1 complexed with the non-hydrolyzable GTP analog… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SSX0 · AlphaFold monomer V2.0 prediction for rac-like GTP-binding protein 1 (Q9SSX0) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SSX0
- Elsewhere: RCSB PDB 4U5X · PDBe 4U5X · UniProt Q9SSX0
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