Research workbench
Structure of ndm-metallo-beta-lactamase
Analyse Structure of ndm-metallo-beta-lactamase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4TZB
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metallo-beta-lactamase
- UniProt
- G9JVE6
- Ligands
- NI, ZN, CO, CD
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metallo-beta-lactamase | protein | 231 | 24% helix, 30% strand | G9JVE6 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 4 copies · chains A
- ZN · Zinc ion · metal · chains A
- CO · Cobalt (II) ion · metal · chains A
- CD · Cadmium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.35 | 0.74 | 22 | CD |
Compared structures
- 4TZB · Structure of NDM-Metallo-beta-lactamase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G9JVE6
- Elsewhere: RCSB PDB 4TZB · PDBe 4TZB · UniProt G9JVE6
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