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High-resolution structure of txte in the absence of substrate

Analyse High-resolution structure of txte in the absence of substrate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4TPN
Type: protein
Length: 386 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative P450-like protein
UniProt: C9ZDC6
Ligands: HEM, LI, SO4
Pockets: 3 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative P450-like protein	protein	386	53% helix, 10% strand	C9ZDC6

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
LI · Lithium ion · metal · chains A
SO4 · Sulfate ion · ion · 5 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	807	0.82	0.85	80	HEM, SO4
2	167	0.44	0.74	24	SO4, LI
3	86	0.35	0.75	15	empty

Compared structures

4TPN · High-resolution structure of TxtE in the absence of substrate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9ZDC6
Elsewhere: RCSB PDB 4TPN · PDBe 4TPN · UniProt C9ZDC6

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