Research workbench
Kutzneria sp. 744 ornithine N-hydroxylase, ktzi-fadred-NADP+-L-orn
Analyse Kutzneria sp. 744 ornithine N-hydroxylase, ktzi-fadred-NADP+-L-orn in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4TLX
- Type
- protein
- Length
- 1,660 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ktzi
- UniProt
- A8CF85
- Ligands
- FDA, NAP, ORN, K
- Pockets
- 14 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Ktzi | protein | 415 | 33% helix, 25% strand | A8CF85 |
Ligands and binding sites
- FDA · Dihydroflavine-adenine dinucleotide · ligand · 4 copies · chains A, B, C, D
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 4 copies · chains A, D, B, C
- ORN · L-ornithine · ligand · 4 copies · chains A, B, C, D
- K · Potassium ion · metal · 9 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 883 | 0.85 | 0.87 | 105 | FDA, NAP, ORN |
| 2 | 969 | 0.85 | 0.86 | 106 | FDA, NAP, ORN |
| 3 | 714 | 0.85 | 0.89 | 75 | FDA, NAP, ORN |
| 4 | 723 | 0.85 | 0.89 | 73 | FDA, NAP, ORN |
| 5 | 164 | 0.60 | 0.83 | 30 | empty |
Interfaces
6 interfaces between chains.
- A–D · 1866 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 1844 Ų buried · 17 hydrogen bonds · protein-protein
- A–B · 1311 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 1306 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 978 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4TLX · Kutzneria sp. 744 ornithine N-hydroxylase, KtzI-FADred-NADP+-L-orn · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8CF85
- Elsewhere: RCSB PDB 4TLX · PDBe 4TLX · UniProt A8CF85
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