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Native-sad phasing for yetj from bacillus subtilis

Analyse Native-sad phasing for yetj from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4TKQ
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein yetj
UniProt: O31539
Ligands: CA, CL
Pockets: 3 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 83% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein yetj	protein	207	83% helix, 0% strand	O31539

Ligands and binding sites

CA · Calcium ion · metal · chains A
CL · Chloride ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	175	0.61	0.83	20	empty
2	105	0.50	0.80	20	empty
3	65	0.32	0.75	19	empty

Compared structures

4TKQ · Native-SAD phasing for YetJ from Bacillus Subtilis · the same entry in another collection · chain A against A, TM-score 1.00
O31539 · AlphaFold monomer V2.0 prediction for uncharacterized protein yetj (O31539) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31539
Elsewhere: RCSB PDB 4TKQ · PDBe 4TKQ · UniProt O31539

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