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Crystal structure of the cell puncturing protein ORF41 from pseudomonas phage sn

Analyse Crystal structure of the cell puncturing protein ORF41 from pseudomonas phage sn in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4RU3
Type: protein
Length: 205 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Puncturing protein GP41
UniProt: B7VFI6
Ligands: FE, CA
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Puncturing protein GP41	protein	205	11% helix, 31% strand	B7VFI6

Ligands and binding sites

FE · Fe (III) ion · metal · chains A
CA · Calcium ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	109	0.38	0.74	18	empty

Compared structures

4RU3 · Crystal structure of the cell puncturing protein Orf41 from Pseudomonas phage SN · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7VFI6
Elsewhere: RCSB PDB 4RU3 · PDBe 4RU3 · UniProt B7VFI6

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