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The crystallographic structure of metal-free concanavalin a at 2.5 ångströms resolution

Analyse The crystallographic structure of metal-free concanavalin a at 2.5 ångströms… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1APN
Type: protein
Length: 449 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Concanavalin a
UniProt: P02866
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Concanavalin a	protein	224	4% helix, 51% strand	P02866
B	Concanavalin a	protein	225	3% helix, 50% strand	P02866

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.70	0.97	17	empty
2	52	0.31	0.77	13	empty

Interfaces

1 interface between chains.

A–B · 1151 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

1APN · The crystallographic structure of metal-free concanavalin a at 2.5 ångströms resolution · the same entry in another collection · chain A against A, TM-score 1.00
P02866 · AlphaFold monomer V2.0 prediction for concanavalin-a (P02866) · a predicted model of the same protein · chain B against A, TM-score 0.49

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02866
Elsewhere: RCSB PDB 1APN · PDBe 1APN · UniProt P02866

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