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Crystal structure of an atmb (putative membrane lipoprotein) from streptococcus mutans UA159 at 1.91 a resolution

Analyse Crystal structure of an atmb (putative membrane lipoprotein) from streptococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Q5T
Type: protein
Length: 257 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipoprotein
UniProt: I6L927
Ligands: MSE
Pockets: 2 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipoprotein	protein	257	39% helix, 26% strand	I6L927

Ligands and binding sites

MSE · Selenomethionine · ligand · chains A
2PE · Nonaethylene glycol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	142	0.74	0.92	35	MSE
2	95	0.41	0.78	22	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

4Q5T · Crystal structure of an atmB (putative membrane lipoprotein) from Streptococcus mutans… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I6L927
Elsewhere: RCSB PDB 4Q5T · PDBe 4Q5T · UniProt I6L927

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