Research workbench
Structure of bamb fused to a bama potra domain fragment
Analyse Structure of bamb fused to a bama potra domain fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PK1
- Type
- protein
- Length
- 494 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chimera protein of outer membrane protein assembly factors bama and bamb
- UniProt
- P0A940, P77774
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chimera protein of outer membrane protein assembly factors bama and bamb | protein | 494 | 8% helix, 41% strand | P0A940, P77774 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 540 | 0.73 | 0.81 | 73 | empty |
| 2 | 84 | 0.43 | 0.79 | 16 | empty |
| 3 | 56 | 0.28 | 0.74 | 16 | empty |
| 4 | 53 | 0.27 | 0.74 | 16 | empty |
Compared structures
- 4PK1 · Structure of BamB fused to a BamA POTRA domain fragment · the same entry in another collection · chain A against A, TM-score 1.00
- P77774 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bamb (P77774) · a predicted model of the same protein · chain A against A, TM-score 0.69
- P0A940 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bama (P0A940) · a predicted model of the same protein · chain A against A, TM-score 0.30
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A940
- Every structure of UniProt P77774
- Elsewhere: RCSB PDB 4PK1 · PDBe 4PK1 · UniProt P0A940 · UniProt P77774
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