Research workbench
Crystal structure of yetj from bacillus subtilis at pH 6 by pt-sad
Analyse Crystal structure of yetj from bacillus subtilis at pH 6 by pt-sad in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PGW
- Type
- protein
- Length
- 195 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein yetj
- UniProt
- O31539
- Ligands
- PT
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 83% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein yetj | protein | 195 | 83% helix, 0% strand | O31539 |
Ligands and binding sites
- PT · Platinum (II) ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 850 | 0.73 | 0.77 | 60 | PT |
Compared structures
- 4PGW · Crystal structure of YetJ from Bacillus Subtilis at pH 6 by Pt-SAD · the same entry in another collection · chain A against A, TM-score 1.00
- O31539 · AlphaFold monomer V2.0 prediction for uncharacterized protein yetj (O31539) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31539
- Elsewhere: RCSB PDB 4PGW · PDBe 4PGW · UniProt O31539
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