Research workbench
1.7 a resolution structure of GEPHYRIN'S E-domain
Analyse 1.7 a resolution structure of GEPHYRIN'S E-domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PD0
- Type
- protein
- Length
- 416 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gephyrin
- EC
- 2.7.7.75, 2.10.1.1
- UniProt
- Q03555
- Pockets
- 5 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gephyrin (EC 2.7.7.75, 2.10.1.1) | protein | 416 | 21% helix, 33% strand | Q03555 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.41 | 0.75 | 21 | empty |
| 2 | 75 | 0.38 | 0.78 | 20 | empty |
| 3 | 56 | 0.31 | 0.75 | 10 | empty |
| 4 | 50 | 0.30 | 0.77 | 19 | empty |
| 5 | 52 | 0.25 | 0.73 | 12 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03555
- Elsewhere: RCSB PDB 4PD0 · PDBe 4PD0 · UniProt Q03555
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