Research workbench
Structure of the hybrid RNA/DNA R-gcuucggc-D[BR]U in presence of RH(NH3)6+++
Analyse Structure of the hybrid RNA/DNA R-gcuucggc-D[BR]U in presence of RH(NH3)6+++ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IHA
- Type
- RNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(BRU))-3'
- Ligands
- RHD, CL
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(BRU))-3' | rna | 9 | — | — |
Ligands and binding sites
- RHD · Rhodium hexamine ion · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.28 | 0.74 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 368 Ų buried · 26 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 1IHA · Structure of the Hybrid RNA/DNA R-GCUUCGGC-D[BR]U in Presence of RH(NH3)6+++ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1IHA · PDBe 1IHA
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