Research workbench
Crystal structure of VPS4 mit-VFA1 MIM2
Analyse Crystal structure of VPS4 mit-VFA1 MIM2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4NIQ
- Type
- protein
- Length
- 203 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar protein sorting-associated protein 4; VPS4-associated protein 1
- UniProt
- P52917, P40080
Structure
x-ray diffraction · 4 distinct chains · 77% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar protein sorting-associated protein 4 | protein | 82 | 88% helix, 1% strand | P52917 |
| C | VPS4-associated protein 1 | protein | 22 | 32% helix, 5% strand | P40080 |
| B | Vacuolar protein sorting-associated protein 4 | protein | 78 | 90% helix, 1% strand | P52917 |
| D | VPS4-associated protein 1 | protein | 21 | 33% helix, 5% strand | P40080 |
Interfaces
3 interfaces between chains.
- A–C · 926 Ų buried · 12 hydrogen bonds · protein-protein
- B–D · 898 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 846 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4NIQ · Crystal Structure of Vps4 MIT-Vfa1 MIM2 · the same entry in another collection · chain B against B, TM-score 1.00
- P52917 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 4… · a predicted model of the same protein · chain B against A, TM-score 0.95
- P40080 · AlphaFold monomer V2.0 prediction for VPS4-associated protein 1 (P40080) · a predicted model of the same protein · chain C against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52917
- Every structure of UniProt P40080
- Elsewhere: RCSB PDB 4NIQ · PDBe 4NIQ · UniProt P52917 · UniProt P40080
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