Research workbench
Crystal structure analysis of the 16MER gcagacuuaagucugc
Analyse Crystal structure analysis of the 16MER gcagacuuaagucugc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4NFO
- Type
- RNA
- Length
- 48 nucleotides
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gcagacuuaagucugc
- Ligands
- SPM
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Gcagacuuaagucugc | rna | 16 | — | — |
Ligands and binding sites
- SPM · Spermine · ligand · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 369 | 0.50 | 0.72 | 26 | empty |
Interfaces
2 interfaces between chains.
- B–C · 752 Ų buried · 71 hydrogen bonds · nucleic-nucleic
- A–C · 123 Ų buried · 1 hydrogen bond · nucleic-nucleic
Compared structures
- 4NFO · Crystal Structure Analysis of the 16mer GCAGACUUAAGUCUGC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4NFO · PDBe 4NFO
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.