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The form a structure of an E21Q catalytic mutant of a. thaliana IGPD2 in complex with MN2+ and a mixture of its substrate, 2R3S-igp, and an inhibitor, 2S3S-igp, to 1.12 a resolution

Analyse The form a structure of an E21Q catalytic mutant of a. thaliana IGPD2 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4MU3
Type
protein
Length
186 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
EC
4.2.1.19
UniProt
O23346
Ligands
IG2, IYP, MN

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 33% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AImidazoleglycerol-phosphate dehydratase 2, chloroplastic (EC 4.2.1.19)protein18636% helix, 33% strandO23346

Ligands and binding sites

  • IG2 · (2S,3S)-2,3-dihydroxy-3-(1H-imidazol-5-yl)propyl dihydrogen phosphate · ligand · chains A
  • IYP · (2R,3S)-2,3-dihydroxy-3-(1H-imidazol-5-yl)propyl dihydrogen phosphate · ligand · chains A
  • MN · Manganese (II) ion · metal · 2 copies · chains A
  • EDO · 1,2-ethanediol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 4MU3 · The form A structure of an E21Q catalytic mutant of A. thaliana IGPD2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
  • O23346 · AlphaFold monomer V2.0 prediction for imidazoleglycerol-phosphate dehydratase 2… · a predicted model of the same protein · chain A against A, TM-score 1.00

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