Research workbench
The form a structure of an E21Q catalytic mutant of a. thaliana IGPD2 in complex with MN2+ and a mixture of its substrate, 2R3S-igp, and an inhibitor, 2S3S-igp, to 1.12 a resolution
Analyse The form a structure of an E21Q catalytic mutant of a. thaliana IGPD2 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MU3
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Imidazoleglycerol-phosphate dehydratase 2, chloroplastic
- EC
- 4.2.1.19
- UniProt
- O23346
- Ligands
- IG2, IYP, MN
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Imidazoleglycerol-phosphate dehydratase 2, chloroplastic (EC 4.2.1.19) | protein | 186 | 36% helix, 33% strand | O23346 |
Ligands and binding sites
- IG2 · (2S,3S)-2,3-dihydroxy-3-(1H-imidazol-5-yl)propyl dihydrogen phosphate · ligand · chains A
- IYP · (2R,3S)-2,3-dihydroxy-3-(1H-imidazol-5-yl)propyl dihydrogen phosphate · ligand · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4MU3 · The form A structure of an E21Q catalytic mutant of A. thaliana IGPD2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- O23346 · AlphaFold monomer V2.0 prediction for imidazoleglycerol-phosphate dehydratase 2… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O23346
- Elsewhere: RCSB PDB 4MU3 · PDBe 4MU3 · UniProt O23346
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