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Crystal structure of Pseudomonas aeruginosa inosine 5'-monophosphate dehydrogenase
Analyse Crystal structure of Pseudomonas aeruginosa inosine 5'-monophosphate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4AVF
- Type
- protein
- Length
- 1,259 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.23
- Source
- PSEUDOMONAS AERUGINOSA
- Molecule
- Inosine-5'-monophosphate dehydrogenase
- EC
- 1.1.1.205
- UniProt
- Q9HXM5
- Pockets
- 19 · best druggability 0.63
Structure
x-ray diffraction · resolution 2.23 · 4 distinct chains · 36% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) | protein | 314 | 36% helix, 22% strand | Q9HXM5 |
| B | Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) | protein | 316 | 36% helix, 23% strand | Q9HXM5 |
| C | Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) | protein | 314 | 36% helix, 23% strand | Q9HXM5 |
| D | Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) | protein | 315 | 36% helix, 23% strand | Q9HXM5 |
Pockets
19 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 477 | 0.63 | 0.77 | 68 | empty |
| 2 | 219 | 0.47 | 0.74 | 30 | empty |
| 3 | 210 | 0.46 | 0.74 | 29 | empty |
| 4 | 199 | 0.46 | 0.74 | 26 | empty |
| 5 | 206 | 0.46 | 0.74 | 31 | empty |
Interfaces
4 interfaces between chains.
- B–D · 1476 Ų buried · 23 hydrogen bonds · protein-protein
- A–B · 1449 Ų buried · 23 hydrogen bonds · protein-protein
- C–D · 1422 Ų buried · 24 hydrogen bonds · protein-protein
- A–C · 1413 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 4AVF · Crystal structure of pseudomonas aeruginosa inosine 5'- monophosphate dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXM5
- Elsewhere: RCSB PDB 4AVF · PDBe 4AVF · UniProt Q9HXM5
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