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Crystal structure of the FYVE domain of endofin (ZFYVE16) at 1.1A resolution

Analyse Crystal structure of the FYVE domain of endofin (ZFYVE16) at 1.1A resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3T7L
Type
protein
Length
74 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.09
Source
Homo sapiens
Molecule
Zinc finger FYVE domain-containing protein 16
UniProt
Q7Z3T8
Ligands
ZN

Structure

x-ray diffraction · resolution 1.09 · 1 distinct chain · 22% helix, 22% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AZinc finger FYVE domain-containing protein 16protein7422% helix, 22% strandQ7Z3T8

Ligands and binding sites

  • ZN · Zinc ion · metal · 2 copies · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 3T7L · Crystal structure of the fyve domain of endofin (ZFYVE16) at 1.1A resolution · the same entry in another collection · chain A against A, TM-score 1.00
  • Q7Z3T8 · AlphaFold monomer V2.0 prediction for zinc finger fyve domain- containing protein 16… · a predicted model of the same protein · chain A against A, TM-score 0.95

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