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Crystal structure of a 2'-azido-uridine-modified RNA

Analyse Crystal structure of a 2'-azido-uridine-modified RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3S7C
Type: RNA
Length: 27 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.1
Molecule: Ecoli 23 S rRNA Sarcin Ricin loop
Pockets: 1 · best druggability 0.22

Structure

x-ray diffraction · resolution 1.1 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ecoli 23 S rRNA Sarcin Ricin loop	rna	27	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.22	0.72	13	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

3S7C · Crystal structure of a 2'-azido-uridine-modified RNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3S7C · PDBe 3S7C

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