MolNFT v1 · #78380 · RNA

Crystal structure of a 2'-azido-uridine-modified RNA

3S7C · Ecoli 23 S rRNA sarcin ricin loop: “Crystal structure of a 2'-azido-uridine-modified RNA”. X-ray diffraction, 1 pocket (best druggability 0.22). MolNFT v1 #78380 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3S7C
Type: RNA
Length: 27 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ecoli 23 S rRNA sarcin ricin loop
Pockets: 1 · best druggability 0.22

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ecoli 23 S rRNA sarcin ricin loop	rna	27	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.22	0.72	13	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

3S7C · Crystal structure of a 2'-azido-uridine-modified RNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3S7C · PDBe 3S7C

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