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Structure of an uncharacterized domain in polyribonucleotide nucleotidyltransferase from Streptococcus mutans UA159

Analyse Structure of an uncharacterized domain in polyribonucleotide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3H36
Type
protein
Length
78 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.8
Source
Streptococcus mutans
Molecule
Polyribonucleotide nucleotidyltransferase
EC
2.7.7.8
UniProt
Q8DWB2
Ligands
CA

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 85% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APolyribonucleotide nucleotidyltransferase (EC 2.7.7.8)protein7885% helix, 0% strandQ8DWB2

Ligands and binding sites

  • CA · Calcium ion · metal · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

  • 3H36 · Structure of an uncharacterized domain in polyribonucleotide nucleotidyltransferase from… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q8DWB2 · AlphaFold monomer V2.0 prediction for polyribonucleotide nucleotidyltransferase (Q8DWB2) · a predicted model of the same protein · chain A against A, TM-score 0.94

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