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Crystal structure of a protein of unknown function with a cystatin-like fold (saro_2880) from novosphingobium aromaticivorans dsm at 1.30 A resolution

Analyse Crystal structure of a protein of unknown function with a cystatin-like fold… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3G0K
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.3
Source: Novosphingobium aromaticivorans
Molecule: Putative membrane protein
UniProt: Q2G4A7
Ligands: CA
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · resolution 1.3 · 1 distinct chain · 30% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative membrane protein	protein	129	30% helix, 36% strand	Q2G4A7

Ligands and binding sites

CA · Calcium ion · metal · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	397	0.72	0.83	33	MPD

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

3G0K · Crystal structure of a protein of unknown function with a cystatin- like fold (SARO_2880)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2G4A7
Elsewhere: RCSB PDB 3G0K · PDBe 3G0K · UniProt Q2G4A7

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