Research workbench
Crystal Structure of a Squarate Inhibitor bound to MAPKAP Kinase-2
Analyse Crystal Structure of a Squarate Inhibitor bound to MAPKAP Kinase-2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FPM
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.3
- Source
- Homo sapiens
- Molecule
- MAP kinase-activated protein kinase 2
- EC
- 2.7.11.1
- UniProt
- P49137
- Ligands
- 793
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · resolution 3.3 · 1 distinct chain · 34% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MAP kinase-activated protein kinase 2 (EC 2.7.11.1) | protein | 283 | 34% helix, 22% strand | P49137 |
Ligands and binding sites
- 793 · 3-{[(1R)-1-phenylethyl]amino}-4-(pyridin-4-ylamino)cyclobut-3-ene-1,2-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.69 | 0.85 | 35 | 793 |
| 2 | 104 | 0.38 | 0.75 | 17 | empty |
Compared structures
- 3FPM · Crystal structure of a squarate inhibitor bound to mapkap kinase-2 · the same entry in another collection · chain A against A, TM-score 1.00
- P49137 · AlphaFold monomer V2.0 prediction for MAP kinase-activated protein kinase 2 (P49137) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49137
- Elsewhere: RCSB PDB 3FPM · PDBe 3FPM · UniProt P49137
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