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Wee1 kinase complex with inhibitor PD074291

Analyse Wee1 kinase complex with inhibitor PD074291 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3CQE
Type
protein
Length
258 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.5
Source
Homo sapiens
Molecule
Wee1-like protein kinase
EC
2.7.10.2
UniProt
P30291
Ligands
P91, CL
Pockets
2 · best druggability 0.65

Structure

x-ray diffraction · resolution 2.5 · 1 distinct chain · 41% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AWee1-like protein kinase (EC 2.7.10.2)protein25841% helix, 20% strandP30291

Ligands and binding sites

  • P91 · 8-bromo-4-(2-chlorophenyl)-N-(2-hydroxyethyl)-6-methyl-1,3-dioxo-1,2,3,6-tetrahydropyrrolo[3,4-e]indole-7-carboxamide · ligand · chains A
  • CL · Chloride ion · ion · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13540.650.8040P91
2970.450.7919CL, GOL

Compared structures

  • 3CQE · WEE1 kinase complex with inhibitor PD074291 · the same entry in another collection · chain A against A, TM-score 1.00
  • P30291 · AlphaFold monomer V2.0 prediction for WEE1-like protein kinase (P30291) · a predicted model of the same protein · chain A against A, TM-score 0.97

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