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Calcium bound structure of alpha-14 giardin
Analyse Calcium bound structure of alpha-14 giardin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CHK
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.65
- Source
- Giardia lamblia
- Molecule
- Alpha-14 giardin
- UniProt
- Q4VPP4
- Ligands
- CA
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · resolution 1.65 · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-14 giardin | protein | 303 | 76% helix, 0% strand | Q4VPP4 |
Ligands and binding sites
- CA · Calcium ion · metal · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.50 | 0.81 | 28 | empty |
| 2 | 58 | 0.31 | 0.75 | 13 | empty |
| 3 | 55 | 0.31 | 0.76 | 13 | empty |
| 4 | 69 | 0.28 | 0.73 | 16 | empty |
Compared structures
- 3CHK · Calcium bound structure of alpha-14 giardin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4VPP4
- Elsewhere: RCSB PDB 3CHK · PDBe 3CHK · UniProt Q4VPP4
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