Research workbench
Crystal structure of Toc33 from Arabidopsis thaliana in complex with Mg2+ and GMPPNP
Analyse Crystal structure of Toc33 from Arabidopsis thaliana in complex with Mg2+ and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BB4
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.85
- Source
- Arabidopsis thaliana
- Molecule
- T7I23.11 protein
- UniProt
- O23680
- Ligands
- GNP, MG
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · resolution 2.85 · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | T7I23.11 protein | protein | 240 | 39% helix, 20% strand | O23680 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 163 | 0.44 | 0.75 | 29 | MG, GNP |
| 2 | 93 | 0.36 | 0.75 | 20 | empty |
Compared structures
- 3BB4 · Crystal structure of TOC33 from arabidopsis thaliana in complex with MG2+ and gmppnp · the same entry in another collection · chain A against A, TM-score 1.00
- O23680 · AlphaFold monomer V2.0 prediction for translocase of chloroplast 33, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O23680
- Elsewhere: RCSB PDB 3BB4 · PDBe 3BB4 · UniProt O23680
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