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Crystal structure of reducing-end-xylose releasing exo-oligoxylanase Y198F mutant
Analyse Crystal structure of reducing-end-xylose releasing exo-oligoxylanase Y198F… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3A3V
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.39
- Source
- Bacillus halodurans
- Molecule
- Xylanase Y
- EC
- 3.2.1.156
- UniProt
- Q9KB30
- Ligands
- NI
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · resolution 1.39 · 1 distinct chain · 50% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylanase Y (EC 3.2.1.156) | protein | 376 | 50% helix, 8% strand | Q9KB30 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 256 | 0.56 | 0.78 | 34 | GOL |
| 2 | 57 | 0.43 | 0.83 | 18 | empty |
Compared structures
- 3A3V · Crystal structure of reducing-end-xylose releasing exo-oligoxylanase Y198F mutant · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KB30 · AlphaFold monomer V2.0 prediction for reducing end xylose-releasing exo-oligoxylanase… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KB30
- Elsewhere: RCSB PDB 3A3V · PDBe 3A3V · UniProt Q9KB30
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