Research workbench
Structure of YjhT
Analyse Structure of YjhT in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2UVK
- Type
- protein
- Length
- 691 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.5
- Source
- ESCHERICHIA COLI
- Molecule
- Yjht
- UniProt
- P39371
- Pockets
- 10 · best druggability 0.78
Structure
x-ray diffraction · resolution 1.5 · 2 distinct chains · 12% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yjht | protein | 342 | 12% helix, 42% strand | P39371 |
| B | Yjht | protein | 349 | 12% helix, 42% strand | P39371 |
Pockets
10 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 454 | 0.78 | 0.86 | 43 | empty |
| 2 | 460 | 0.77 | 0.86 | 37 | empty |
| 3 | 310 | 0.73 | 0.85 | 50 | empty |
| 4 | 112 | 0.68 | 0.90 | 23 | empty |
| 5 | 531 | 0.66 | 0.77 | 46 | empty |
Interfaces
1 interface between chains.
- A–B · 1332 Ų buried · 30 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39371
- Elsewhere: RCSB PDB 2UVK · PDBe 2UVK · UniProt P39371
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