Research workbench
alkyldihydroxyacetonephosphate synthase in P212121
Analyse alkyldihydroxyacetonephosphate synthase in P212121 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2UUU
- Type
- protein
- Length
- 2,168 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.95
- Source
- DICTYOSTELIUM DISCOIDEUM
- Molecule
- Alkyldihydroxyacetonephosphate synthase
- EC
- 2.5.1.26
- UniProt
- O96759
- Ligands
- FAD, PL3
- Pockets
- 20 · best druggability 0.86
Structure
x-ray diffraction · resolution 1.95 · 4 distinct chains · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) | protein | 550 | 37% helix, 23% strand | O96759 |
| B | Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) | protein | 540 | 38% helix, 23% strand | O96759 |
| C | Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) | protein | 541 | 38% helix, 23% strand | O96759 |
| D | Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26) | protein | 537 | 37% helix, 23% strand | O96759 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 4 copies · chains A, B, C, D
- PL3 · Hexadecan-1-ol · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 715 | 0.86 | 0.89 | 76 | FAD, PL3 |
| 2 | 753 | 0.85 | 0.88 | 78 | FAD, PL3 |
| 3 | 805 | 0.84 | 0.87 | 85 | FAD, PL3 |
| 4 | 765 | 0.84 | 0.87 | 79 | FAD, PL3 |
| 5 | 780 | 0.75 | 0.80 | 93 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1981 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 1826 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 171 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2UUU · Alkyldihydroxyacetonephosphate synthase in P212121 · the same entry in another collection · chain D against D, TM-score 1.00
- O96759 · AlphaFold monomer V2.0 prediction for alkyldihydroxyacetonephosphate synthase (O96759) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O96759
- Elsewhere: RCSB PDB 2UUU · PDBe 2UUU · UniProt O96759
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.