Research workbench
D(GTATACC) under hydrostatic pressure of 1.39 GPa
Analyse D(GTATACC) under hydrostatic pressure of 1.39 GPa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PLB
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.6
- Molecule
- 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3'
- Ligands
- SPM
Structure
x-ray diffraction · resolution 1.6 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3' | dna | 8 | — | — |
Ligands and binding sites
- SPM · Spermine · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 370 Ų buried · 43 hydrogen bonds · nucleic-nucleic
Compared structures
- 2PLB · D(GTATACC) under hydrostatic pressure of 1.39 gpa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2PLB · PDBe 2PLB
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