Research workbench

Solution NMR structure of an integrase domain from protein SPA4288 from Salmonella enterica, Northeast Structural Genomics Consortium Target SlR105H

Analyse Solution NMR structure of an integrase domain from protein SPA4288 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2KKV
Type: protein
Length: 121 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: NOT
Source: Salmonella enterica subsp. enterica serovar Paratyphi A
Molecule: Integrase
UniProt: Q5PJC5
Pockets: 2 · best druggability 0.63

Structure

solution nmr · resolution NOT · 1 distinct chain · 49% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Integrase	protein	121	49% helix, 0% strand	Q5PJC5

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	446	0.63	0.77	34	empty
2	82	0.49	0.82	23	empty

Compared structures

2KKV · Solution NMR structure of an integrase domain from protein SPA4288 from salmonella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5PJC5
Elsewhere: RCSB PDB 2KKV · PDBe 2KKV · UniProt Q5PJC5

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.