Research workbench

Zinc-finger 2 of Nup153

Analyse Zinc-finger 2 of Nup153 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2K0C
Type: protein
Length: 35 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: NOT
Source: Rattus norvegicus
Molecule: Nuclear pore complex protein Nup153
UniProt: P49791
Ligands: ZN
Pockets: 1 · best druggability 0.30

Structure

solution nmr · resolution NOT · 1 distinct chain · 0% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nuclear pore complex protein Nup153	protein	35	0% helix, 17% strand	P49791

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.30	0.74	18	empty

Compared structures

2K0C · Zinc-finger 2 of NUP153 · the same entry in another collection · chain A against A, TM-score 1.00
P49791 · AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP153 (P49791) · a predicted model of the same protein · chain A against A, TM-score 0.51

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P49791
Elsewhere: RCSB PDB 2K0C · PDBe 2K0C · UniProt P49791

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