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Bacterial dynamin-like protein BDLP

Analyse Bacterial dynamin-like protein BDLP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2J69
Type: protein
Length: 2,684 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3
Source: NOSTOC PUNCTIFORME
Molecule: Bacterial dynamin-like protein
Pockets: 20 · best druggability 0.82

Structure

x-ray diffraction · resolution 3 · 1 distinct chain · 67% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Bacterial dynamin-like protein	protein	671	67% helix, 8% strand	—

Pockets

20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	561	0.82	0.88	58	empty
2	540	0.82	0.88	59	empty
3	587	0.82	0.87	61	empty
4	643	0.81	0.86	75	empty
5	920	0.77	0.79	91	empty

Interfaces

5 interfaces between chains.

A–C · 1152 Å² buried · 22 hydrogen bonds · protein-protein
B–C · 389 Å² buried · 1 hydrogen bond · protein-protein
A–D · 377 Å² buried · 0 hydrogen bonds · protein-protein
A–B · 235 Å² buried · 4 hydrogen bonds · protein-protein
C–D · 211 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

2J69 · Bacterial dynamin-like protein bdlp · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2J69 · PDBe 2J69

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