MolNFT v1 · #40870 · protein
Bacterial dynamin-like protein bdlp
2J69: “Bacterial dynamin-like protein bdlp”. X-ray diffraction, 20 pockets (best druggability 0.82). MolNFT v1 #40870 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2J69
- Type
- protein
- Length
- 2,684 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacterial dynamin-like protein
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Bacterial dynamin-like protein | protein | 671 | 67% helix, 8% strand | — |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 561 | 0.82 | 0.88 | 58 | empty |
| 2 | 540 | 0.82 | 0.88 | 59 | empty |
| 3 | 587 | 0.82 | 0.87 | 61 | empty |
| 4 | 643 | 0.81 | 0.86 | 75 | empty |
| 5 | 920 | 0.77 | 0.79 | 91 | empty |
Interfaces
5 interfaces between chains.
- A–C · 1152 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 389 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 377 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 235 Ų buried · 4 hydrogen bonds · protein-protein
- C–D · 211 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 2J69 · Bacterial dynamin-like protein BDLP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2J69 · PDBe 2J69
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