Research workbench
Pterocarpus angolensis Lectin (PAL) In Complex With D-Mannose (anomeric mixture)
Analyse Pterocarpus angolensis Lectin (PAL) In Complex With D-Mannose (anomeric mixture) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ARE
- Type
- protein
- Length
- 480 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Pterocarpus angolensis
- Molecule
- lectin
- UniProt
- Q8GSD2
- Ligands
- MAN, MN, CA
- Pockets
- 2 · best druggability 0.31
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 5% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | lectin | protein | 240 | 5% helix, 48% strand | Q8GSD2 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.31 | 0.77 | 15 | empty |
| 2 | 57 | 0.30 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 916 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 2ARE · Pterocarpus angolensis lectin (pal) in complex with D-mannose (anomeric mixture) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8GSD2
- Elsewhere: RCSB PDB 2ARE · PDBe 2ARE · UniProt Q8GSD2
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