Research workbench
Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae
Analyse Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Y9Q
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Vibrio cholerae
- Molecule
- transcriptional regulator, HTH_3 family
- UniProt
- Q9KQN0
- Ligands
- MED, ZN
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · resolution 1.9 · 1 distinct chain · 30% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | transcriptional regulator, HTH_3 family | protein | 178 | 30% helix, 33% strand | Q9KQN0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.73 | 0.99 | 18 | MED |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 1Y9Q · Crystal structure of HTH_3 family transcriptional regulator from vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KQN0
- Elsewhere: RCSB PDB 1Y9Q · PDBe 1Y9Q · UniProt Q9KQN0
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