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Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with xylotetraose
Analyse Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UYZ
- Type
- protein
- Length
- 262 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.6
- Source
- CELLVIBRIO MIXTUS
- Molecule
- Cellulase B
- UniProt
- O07653
- Ligands
- XYP, CA, NA
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · resolution 1.6 · 1 distinct chain · 0% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cellulase B | protein | 131 | 0% helix, 62% strand | O07653 |
Ligands and binding sites
- XYP · beta-D-xylopyranose · sugar · 4 copies · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A, B
- NA · Sodium ion · metal · 3 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.41 | 0.74 | 24 | GOL |
| 2 | 76 | 0.37 | 0.77 | 20 | GOL |
Interfaces
1 interface between chains.
- A–B · 484 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1UYZ · Carbohydrate binding module (CBM6CM-2) from cellvibrio mixtus lichenase 5A in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O07653
- Elsewhere: RCSB PDB 1UYZ · PDBe 1UYZ · UniProt O07653
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