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Structure of single-stranded DNA-binding protein (SSB) from D. radiodurans

Analyse Structure of single-stranded DNA-binding protein (SSB) from D. radiodurans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SE8
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.8
Source: Deinococcus radiodurans
Molecule: Single-strand binding protein
UniProt: Q9RY51
Pockets: 3 · best druggability 0.34

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 7% helix, 63% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-strand binding protein	protein	213	7% helix, 63% strand	Q9RY51

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.34	0.74	21	empty
2	70	0.31	0.75	15	empty
3	65	0.27	0.73	18	empty

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

1SE8 · Structure of single-stranded DNA-binding protein (ssb) from D. radiodurans · the same entry in another collection · chain A against A, TM-score 1.00
Q9RY51 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein (Q9RY51) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RY51
Elsewhere: RCSB PDB 1SE8 · PDBe 1SE8 · UniProt Q9RY51

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