MolNFT v1 · #21554 · protein
Structure of single-stranded DNA-binding protein (ssb) from D. radiodurans
1SE8 · Single-strand binding protein: “Structure of single-stranded DNA-binding protein (ssb) from D. radiodurans”. X-ray diffraction, 3 pockets (best druggability 0.34). MolNFT v1 #21554 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1SE8
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single-strand binding protein
- UniProt
- Q9RY51
- Pockets
- 3 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single-strand binding protein | protein | 213 | 7% helix, 63% strand | Q9RY51 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.34 | 0.74 | 21 | empty |
| 2 | 70 | 0.31 | 0.75 | 15 | empty |
| 3 | 65 | 0.27 | 0.73 | 18 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 1SE8 · Structure of single-stranded DNA-binding protein (SSB) from D. radiodurans · the same entry in another collection · chain A against A, TM-score 1.00
- Q9RY51 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein (Q9RY51) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RY51
- Elsewhere: RCSB PDB 1SE8 · PDBe 1SE8 · UniProt Q9RY51
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