Research workbench
Crystal structure of the Salmonella effector SseK1
Analyse Crystal structure of the Salmonella effector SseK1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7YM5
- Type
- protein
- Length
- 304 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.45
- Source
- Salmonella enterica
- Molecule
- Type III secretion system effector arginine glycosyltransferase SseK1
- UniProt
- A0A741VJQ1
- Ligands
- UDP, MN
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · resolution 3.45 · 1 distinct chain · 39% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III secretion system effector arginine glycosyltransferase SseK1 | protein | 304 | 39% helix, 17% strand | A0A741VJQ1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 278 | 0.62 | 0.80 | 34 | MN, UDP |
| 2 | 66 | 0.39 | 0.79 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A741VJQ1
- Elsewhere: RCSB PDB 7YM5 · PDBe 7YM5 · UniProt A0A741VJQ1
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