Research workbench
101D: Refinement of netropsin bound to DNA: bias and feedback in electron density MAP interpretation
Analyse 101D: Refinement of netropsin bound to DNA: bias and feedback in electron… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 101D
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Authors
- Goodsell, D.S., Kopka, M.L., Dickerson, R.E.
- Deposited
- 12/14/94
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.25
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
- Ligands
- NT, MG
Structure
x-ray diffraction · resolution 2.25 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3') | dna | 12 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 575 Ų buried · 63 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 101D · Refinement of netropsin bound to DNA: bias and feedback in electron density MAP… · the same entry in another collection · chain A against A, TM-score 1.00
- 101D · Refinement of netropsin bound to DNA: bias and feedback in electron density MAP… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 101D · PDBe 101D
Other records of 101D
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