MolNFT v1 · #2 · DNA
101D: Refinement of netropsin bound to DNA: bias and feedback in electron density MAP interpretation
101D · DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR) P*GP*CP*G)-3'): “Refinement of netropsin bound to DNA: bias and feedback in electron density MAP interpretation”. X-ray diffraction, 2 ligands (NT, MG). MolNFT v1 #2 on GenesisL1: 3D…
- PDB
- 101D
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Deposited
- 14-DEC-94
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR) P*GP*CP*G)-3')
- Ligands
- NT, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR) P*GP*CP*G)-3') | dna | 12 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 575 Ų buried · 63 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 101D · Refinement of netropsin bound to DNA: bias and feedback in electron density MAP… · the same entry in another collection · chain A against A, TM-score 1.00
- 101D · Refinement of netropsin bound to DNA: bias and feedback in electron density MAP… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 101D · PDBe 101D
Other records of 101D
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.