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Crystal structure of the beta-glycosidase from the hyperthermophile thermosphaera aggregans

Analyse Crystal structure of the beta-glycosidase from the hyperthermophile… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QVB
Type: protein
Length: 962 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Thermosphaera aggregans
Molecule: Beta-glycosidase
UniProt: Q9YGA8
Pockets: 5 · best druggability 0.76

Structure

x-ray diffraction · resolution 2.4 · 1 distinct chain · 41% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Beta-glycosidase	protein	481	41% helix, 17% strand	Q9YGA8

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	814	0.76	0.80	71	empty
2	789	0.76	0.80	65	empty
3	60	0.72	0.98	20	empty
4	87	0.42	0.79	16	empty
5	85	0.41	0.79	16	empty

Interfaces

1 interface between chains.

A–B · 909 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

1QVB · Crystal structure of the beta-glycosidase from the hyperthermophile thermosphaera… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YGA8
Elsewhere: RCSB PDB 1QVB · PDBe 1QVB · UniProt Q9YGA8

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